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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttgaactgtctcaatgtttcttcccatttcccactaatttacttttaagctaactaatgtgagtgcctgatggattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGATAGCATTGTTGATTATAGGACCTGAATATGCTTTTGGTTCATCAGA

Basic information

species Glycine max
transcript GLYMA03G21690.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G21690.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 7
gtaacttgaa--ctgtctcaatgtttcttcccatttcccactaatttacttttaagctaact----aatgtgagtgcctgatggattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGATAGCATTGTTGATTATAGGACCTGAATATGCTTTTGGTTCATCAGA
|||| |  ||  | || |         |      ||   |    | |||| |||   | ||         ||| |   |       ||  |||||||||| || ||||||||||| ||||||||  |||| ||||||||||||||| ||||  |  | | |||     | || ||||| ||||| ||||| ||
gtaattataatgcagtttttcaacccatggtaggtttttaggtttgtactcttattttgaccttgaggaatgaatttttccctttctggacagAGCAAGTTATCGATGGGCTTGATAGAGCTGTAATGACAATGAAGAAGGGTGAGGTAGCCCTTCTCACTATTCATTCAGATTATGCATTTGGCTCATCTGA

upper sequence: GLYMA03G21690.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0958g00020.t01 (Vitis vinifera), 3'ss of exon 3
gtaacttgaa--ctgtctcaatgtttcttcccatttcccactaatttacttttaagctaact----aatgtgagtgcctgatggattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGATAGCATTGTTGATTATAGGACCTGAATATGCTTTTGGTTCATCAGA
|||| |  ||  | || |         |      ||   |    | |||| |||  || ||         ||| |   |       ||  |||||||||| || ||||||||||| ||||||||  |||| ||||||||||||||| ||||  |  | | |||     | || ||||| ||||| ||||| ||
gtaattataatgcagtttttcaacccatggtaggtttttaggtttgtactcttattctgaccttgaggaatgaatttttccctttctggacagAGCAAGTTATCGATGGGCTTGATAGAGCTGTAATGACAATGAAGAAGGGTGAGGTAGCCCTTCTCACTATTCATTCAGATTATGCATTTGGCTCATCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574028|gb|CX547003.1|CX547003
EST:     ACGATGAAGGAGAGCTG-TTGAATTTCAAAACTGATGAGG                         AGCAAGTAA-TGATNGGGCTTGACAGAGCTGTGTTGACTATG-AGAAAGGG
genomic: ACGATGAAGGAGAGCTGTTTGAA-TTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGAT-GGGCTTGACAGAGCTGTGTTGACTATGAAG-AAGGG
EST: gi|193717457|gb|FK652855.1|FK652855
EST:     GACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGG                         AGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
genomic: GACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
EST: gi|192332848|gb|FK026849.1|FK026849
EST:     AAAGGGCCATGACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGG                         AGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
genomic: AAAGGGCCATGACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
EST: gi|207764297|gb|GD735326.1|GD735326
EST:     AAGGAGAGCTGTTTGAATTCAAAACTGATGAGG                         AGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
genomic: AAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
EST: gi|193311683|gb|FK278127.1|FK278127
EST:     GACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGG                         AGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG
genomic: GACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGGgtaacttgaa ... gattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccactaatttacttttaagctaactaatgtgagtgcctgatggattgagcagAGCAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGATAGCATTGTTGATTATAGGACCTGAATATGCTTTTGGTTCATCAGA
     actaatttacttttaa  TA-rich tract