1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atctttgggattatttttgtatacacccaactatgtttactttccattgttaccctttatcattttttgaattctgacatttctgttttggtcttgatagTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAATGGACCACAATTATATCAG
species | Glycine max |
transcript | GLYMA03G16660.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAACTTGCTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGG TGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAAEST: gi|22933042|gb|BU550181.1|BU550181
genomic: CAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGGgtaattattt ... gtcttgatagTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAA
EST: CAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGG TGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAAEST: gi|12772361|gb|BG237288.1|BG237288
genomic: CAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGGgtaattattt ... gtcttgatagTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAA
EST: CAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGG TGGTG-TAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAAEST: gi|9899371|gb|BE608339.1|BE608339
genomic: CAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGGgtaattattt ... gtcttgatagTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAA
EST: CAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGG TGGTGTAAGGCCTTTTGGAGTG
genomic: CAACTTGTTAGGGAAGTTGCTGCCGTAATGCAGGAATTTACTCAGTCTGGgtaattattt ... gtcttgatagTGGTGTTAGGCCTTTTGGAGTG
attgttaccctttatcattttttgaattctgacatttctgttttggtcttgatagTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAATGGACCACAATTATATCAG
ttctgac putative branch site (score: 2)
tttatcattttttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctttgggattatttttgtatacacccaactatgtttactttccattgttaccctttatcattttttgaattctgacatttctgttttggtcttgatagTGGTGTTAGGCCTTTTGGAGTGTCACTGCTAGTTGCTGGATTTGATGATAATGGACCACAATTATATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - -tacaccc
- - - - - - - - - - - - - - - - - - - -ctttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg