1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctatatgttttagccttaaattgtcaaacaagtagttatattgtaaatatgtatcctttatcaaaactgatttgcgtatgtaatctgatgtattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG
species | Glycine max |
transcript | GLYMA03G14780.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|10848284|gb|BF071710.1|BF071710
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|19053009|gb|BM731676.1|BM731676
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|22930316|gb|BU547463.1|BU547463
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|209724657|gb|BW677737.1|BW677737
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|10255376|gb|BE823142.1|BE823142
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|209707510|gb|BW664969.1|BW664969
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|7588265|gb|AW704064.1|AW704064
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|15286162|gb|BI470053.1|BI470053
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|213607924|gb|DB983879.1|DB983879
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGAEST: gi|151396786|gb|EV266659.1|EV266659
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGA
EST: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGAT GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTG
genomic: CTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACATTGAAGAATGATgtaagttgct ... tattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTG
aatatgtatcctttatcaaaactgatttgcgtatgtaatctgatgtattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG
tattttcc CT-rich tract
tttatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatatgttttagccttaaattgtcaaacaagtagttatattgtaaatatgtatcctttatcaaaactgatttgcgtatgtaatctgatgtattttccagGGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG
- - - - - - gccttaa
- - - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgatg