Sequence
atgc intronic sequence ATGC exonic sequence...aataataaatacaagataacataaacataaatgtaatctaacaactacattgtcaatgcagcaattttttgtctaactcaattctcctgttgatgtccagCGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAG
Basic information
species | Glycine max |
transcript | GLYMA03G14200.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G14200.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 3'ss of exon 7
aataataaatacaagataacataaaca-taaatgtaatctaacaactacattgtcaatgcagcaattttttgtctaactcaattctcctgttgatgtccagCGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAG
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-------------------gttaaacaattaagataaatctatatttcttcatttcattccttcatccatcata-accgtagtttccttgtc--tcttcagCAAATAGAGTTCGGCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCTAAATTTCGGAAGCATGAAATGCGCATTAAATTGAG
upper sequence: GLYMA03G14200.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 3'ss of exon 6
------aataataaatacaagataacataaacataaatgta--atctaacaactacattgtcaatgcagcaattttttgtctaactcaattctcctgttg------atgtccagCGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAG
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gttgtcatggctatacatagttttgtttttttttacctttaccatcttattctgacatagt---ttcaccttcttttgctattaccaatttattatgatgggtcatatttccagCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6455475|gb|AW186158.1|AW186158EST: GCCATCAGCTGCCATTGCAAAAGATCTTGAAGAAGCTCGAGTAACAGCAG CGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATC
genomic: GCCATCAGCTGCCATTGCAAAAGATCTTGAAGAAGCTCGAGTAACAGCAGgtgaactcaa ... tgatgtccagCGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacattgtcaatgcagcaattttttgtctaactcaattctcctgttgatgtccagCGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAG
ttctcctgtt CT-rich tract
aattttttgtctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aataataaatacaagataacataaacataaatgtaatctaacaactacattgtcaatgcagcaattttttgtctaactcaattctcctgttgatgtccagCGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAG
- - - -aatacaag
- - - - - - - - - - - - - - - - - - - - - - ctacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctgt