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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccattcataatcttttatctttagaacattggatattggacaggcactgataaccttctatggactatagATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCTAGTCACTGCTGTGGTTTCTGCATCACTTGCCACACTTACATGCTATCCT

Basic information

species Glycine max
transcript GLYMA03G08120.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G08120.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 3'ss of exon 7
---------------gtgagtccatt----cataatcttttatctttagaacattggatattggacaggcac-tgataaccttctatggactat-agATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCTAGTCACTGCTGTGGTTTCTGCATCACTTGCCACACTTACATGCTATCCT
                   | |||||    | || |   | |       ||||    |||||   | |  || |||    |||||||||   || ||  | |||||||| ||||||||||| || |||||||| |||||||| |||||| | |||| | | || || ||  |  |||||||| | |  |||||||||
gtgagcttcctcttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcagGGTGAAGAAGTCTTTGCCAGAGAAGTACCAAAAGAGGACTGAAACCTCTCTATTGACTGGTTTAGTGTCAGCTACCATTGCCACAGTCATGTGCTATCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7146319|gb|AW508241.1|AW508241
EST:     CTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTT                         ATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCT
genomic: CTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagtccat ... tggactatagATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCT
EST: gi|15287432|gb|BI471323.1|BI471323
EST:     CTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTT                         ATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCT
genomic: CTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagtccat ... tggactatagATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttagaacattggatattggacaggcactgataaccttctatggactatagATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCTAGTCACTGCTGTGGTTTCTGCATCACTTGCCACACTTACATGCTATCCT
                                tgataac  putative branch site (score: 2)
                                      ccttctat  CT-rich tract
                 atatt  TA-rich tract