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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcttttaaattgttgatctgttgtacatgtgtagTGAAAACCAATGATATGATGCTAGTAATATACCTCTCATCTCTCATTAAAAGTGTAATTGCACTCCACAACTTGATTAACAACAAG

Basic information

species Glycine max
transcript GLYMA03G07990.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07990.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G05780.1 (Arabidopsis thaliana), 3'ss of exon 8
-----------------------------------------------gtctctttta--aattgttgatctgttgtacatgtgtagTGAAAACCAATGATATGATGCTAGTAATATACCTCTCATCTCTCATTAAAAGTGTAATTGCACTCCACAACTTGATTAACAACAAG
                                                |||  || |  |||  ||  | | ||    ||||| ||||||||| ||||| |||||||| || || || || ||||| ||||||   ||||||||||| |||||||||||||| |||||||||
gtgagtttctgctatcattttgatattatattgggctgctttcttagatctgcttcattaatctttactgtatttataatgtgcagTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCATTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctcttttaaattgttgatctgttgtacatgtgtagTGAAAACCAATGATATGATGCTAGTAATATACCTCTCATCTCTCATTAAAAGTGTAATTGCACTCCACAACTTGATTAACAACAAG
                               tgttgat  putative branch site (score: 4)
                                         ttttaaattgttgat  TA-rich tract