Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatacttgattgctaagcataaacaatatcaatatgcaatggttctcccacttattgatcctgtatgaatgcagGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTCGTTTTGGGAATATTAGG

Basic information

species Glycine max
transcript GLYMA03G07890.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730359|gb|BM525833.1|BM525833
EST:     ATCCACAAGGGGAAAAG                         GCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTCGTT
genomic: ATCCACAAGGGGAAAAGgtagatactt ... atgaatgcagGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTCGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacaatatcaatatgcaatggttctcccacttattgatcctgtatgaatgcagGCTGAGACAACATGGGCACTAACAGTTCTAGGGTATCTGGCAAAATTCGTTTTGGGAATATTAGG
                                 tattgat  putative branch site (score: 3)
 aatatcaatat  TA-rich tract