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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgattattatttttaaatgatgagactatgatgtcaacacatttctgagtaatattattgtacttattttgatactgttgctatcatatcctgtttgtagCATGCTTACAATCCTGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGGGCACATTTGGAATCTTTTCTAGAAACAGCTAGAACATTCAATTTGATTT

Basic information

species Glycine max
transcript GLYMA03G07310.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07390.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G17620.1 (Arabidopsis thaliana), 3'ss of exon 6
tgattattattt--ttaaatgatgagactatgatgtcaacacatttctgagtaatattattgtacttattttgatactgttgctatcatatcctgtttgtagCATGCTTACAATCCTGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGGGCACATTTGGAATCTTTTCTAGAAACAGCTAGAACATTCAATTTGATTT
    || || ||  | |  || ||| |  | ||      || ||   | | |  || || | || | |  ||||||    |       | | ||  ||  ||||||||||||| || ||||| || |||||||| |||||||| ||| |  |||| | ||| ||||| ||||| |||||||||||  ||||||||   || |
-tcctactacttaatgacttgttgatagaaggaaacagtcatatacataattcctactact-tattgacgttgatagaaatatgtctgttttctcctttcagCATGCTTACAACCCAGATGAAGAATATACTGAAGTGGAATCTCAACTAAGGGCTCGTTTAGAATCGTTTCTTGAAACAGCTAGGGCATTCAATACAATCT

upper sequence: GLYMA03G07390.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0024g01470.t01 (Vitis vinifera), 3'ss of exon 6
tgattattatttttaaatgatgagactatgatgtcaacacatttctgagtaatattattgtactt---attttgatactgtt-gctatcatatcctgt---ttgtagCATGCTTACAATCCTGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGGGCACATTTGGAATCTTTTCTAGAAACAGCTAGAACATTCAATTTGATTT
      |  |  || | || ||  | || |   |  | | ||||     |  | || ||    ||    |||  |||   ||   |||  |  | | |   || |||||||| ||||| || ||||||||||||   || ||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||| ||||||
------tagtcctttactgctgt-attacgtctttcataaattttattttcttgtttttacgttttttgtttaaatatcattcattattgtggcttctgcattttagCATGCATACAACCCAGATGAGGAGTATGAAGAAGTGGAATCCCAGTTGCGGGCACATTTGGAATCTTTTCTAGAAACTGCAAGATCATTCAATGTGATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtaatattattgtacttattttgatactgttgctatcatatcctgtttgtagCATGCTTACAATCCTGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGGGCACATTTGGAATCTTTTCTAGAAACAGCTAGAACATTCAATTTGATTT
                     ttttgat  putative branch site (score: 4)
                                           tcctgttt  putative PPT
     aatattattgtactta  TA-rich tract