1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggagttagcgcaaatatgtgaatgtgagactgcaataatcatacaagctttgaagaaaaaatttggctgacaattgtggcactgttgttttattctgtagATGGACACAGTGAAGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAG
species | Glycine max |
transcript | GLYMA03G01960.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGTTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCTGCATGTTATT ATGGACACAGTGAAGCAGAATTTGGAATGTCTTGGTGTGCTGGCTTTGGAGEST: gi|120496587|gb|EH224754.1|EH224754
genomic: CAGTTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCTGCATGTTATTgtaagtcaag ... tattctgtagATGGACACAGTGAAGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAG
EST: CAGTTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCTGCATGTTATT ATGGACACAGTGAAGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAGEST: gi|15203065|gb|BI425833.1|BI425833
genomic: CAGTTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCTGCATGTTATTgtaagtcaag ... tattctgtagATGGACACAGTGAAGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAG
EST: CAGTTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCTGCATGTTATT ATGGACACAGTGAAGCAGAATTTGGAATGTCTTGGTGTGCTGGCTTTGGAGEST: gi|120496384|gb|EH224551.1|EH224551
genomic: CAGTTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCTGCATGTTATTgtaagtcaag ... tattctgtagATGGACACAGTGAAGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAG
EST: CAGTTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCTGCATGTTATT ATGGACACAGTGAAGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAGEST: gi|120496729|gb|EH224896.1|EH224896
genomic: CAGTTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCTGCATGTTATTgtaagtcaag ... tattctgtagATGGACACAGTGAAGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAG
EST: CAGTTCTGACAAAAATGGAGAACCTGTCATATTGGACCCTGCATGTTATT ATGGACACAGTGAAGCAGAATTTGGTATGTCCTTGGTGTGCTGGGCTT-GG
genomic: CAGTTCTGACAAAAATGGAGAGCCTGTCATATTGGACCCTGCATGTTATTgtaagtcaag ... tattctgtagATGGACACAGTGAAGCAGAATTTGGTATGTC-TTGGTGTGCTGG-CTTTGG
agctttgaagaaaaaatttggctgacaattgtggcactgttgttttattctgtagATGGACACAGTGAAGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAG
ggctgac putative branch site (score: 3)
ttttattct putative PPT
tgaagaaaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagttagcgcaaatatgtgaatgtgagactgcaataatcatacaagctttgaagaaaaaatttggctgacaattgtggcactgttgttttattctgtagATGGACACAGTGAAGCAGAATTTGGTATGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - -gaatgtg
- - - - - - - - - - - - - -gactgca
- - - - - - - - - - - - - - - - - - - - -tacaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttg