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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcctttaccttctgaatttgaacttttgaagatattttgattgtatgctcctgggtttatgatcttattgcattttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT

Basic information

species Glycine max
transcript GLYMA03G01850.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os10g37740.1 (Oryza sativa), 3'ss of exon 7
gtgagttcctttaccttctgaatttgaacttttgaagatattttgattgtatgctcctgggtttatgatcttattgcattttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT
||  | | |||  ||| || |   ||     ||||   | | |||    | |  |     |   |||     | | ||||| |||||||| |||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| || || || || || || || |||||||| |
gtatgcttcttgtcctgct-agcatg-----ttgattctgtgttgcacatgtattt----gacaatgcagacactccattt-cagGTTCCTGGTGAACCTAACATATCATACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACAGAGTATACCACAGCAATTGATATCT

upper sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G131853_T01 (Zea mays), 3'ss of exon 7
gtgagttcctttaccttctgaatttgaacttttgaagatattttgattg--tatgctcctgggtttatgatcttattgcat---tttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT
                  |  | ||     ||| |   | |||    ||  |||  || ||| ||||  |   ||    ||   |||||||| || ||||| || |||||||||||||||||||| || |||||||| ||||| ||||| |||||||| || || || || || ||||| || ||||| |
-----------------gtatacttctctcttttagtttgtttctgctgaatatcttcatggatttaataaagtaaaatatccatttcagGTCCCTGGTGAGCCTAACATATCGTACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACGGAGTATACCACTGCGATCGATATCT

upper sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G109624_T01 (Zea mays), 3'ss of exon 7
gtgagttcctttaccttctgaatttgaacttttgaagatattttgattg--tatgctcctgggtttatgatcttattgcat---tttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT
                  |  | ||     ||| |   | ||    |||  |||  || ||| ||||  |   ||    ||   |||||||| || ||||| || |||||||||||||||||||| || |||||||| ||||| ||||| |||||||| || || || || || ||||| || ||||| |
-----------------gtacacttctctcttttagtttgttcctgttgaatatcttcatggatttaataaagtaaaatatccatttcagGTCCCTGGTGAGCCTAACATATCGTACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACGGAGTATACCACTGCAATCGATATCT

upper sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgagttcctttaccttctgaatttgaacttttgaagatattttgattgtatgctcctgggtttatgatcttattgcattttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT
||  |||| |||   || |||   |||  | ||| ||||   || ||  | ||      | |   | |     ||    | |||||| ||||||||||| |||||||| || || ||||| || || || || || |||||||||||||||||||| || || || || | ||| ||||| ||||
gtatgttcattt-ttttttga---tgagttcttggagatgagtt-atcatttgaataatgatggctaacaccctttgcgtctcagGTACCCGGTGAACCTAACATATCCTATATATGCTCCCGGTACTACAGGGCCCCAGAACTTATATTTGGGGCGACAGAGTATACCAATGCCATTGACATGT

upper sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
gtgagttcctttaccttctgaatttgaacttttgaaga-tattttg--attgtatgctcctgggtttatgatcttattgcattttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT
    ||   ||||   |||   || ||| |||| || | || ||||  || | | | |      || ||   | |  ||       |||| || |||||||| |||||||| || ||||||||  | |||||||| ||||||||||| || |||||||| || ||||| |||||||| ||||||||||
----gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggttttgaacttcatttgcctgatgg-----tagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT

upper sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 3'ss of exon 6
---------gtgagttcctttaccttctgaatttgaacttttgaagatattttgattgtatgc-tcctgggtttatgatctta----ttgcatttt-cagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT
         |||  | |   ||   |   ||||    | |  |    |   |||| ||  ||  | | |  || || ||  |     |||  || | |||||    || || || || || ||||||||||| || ||||||||  | ||||| || || |||||||| || || |||||||||||||| ||||| || |
gagtctgcagtggttgctcataatatggaaattgtctcgtgcggtattcagttgaatgcgtgggtgcagcattgatcatagtgagatttgagttgtgcagGTGAAAGGGGAGCCTAATATTTCGTACATTTGTTCACGATATTACCGTGCTCCCGAGCTGATATTTGGAGCTACAGAATACACAACTGCGATTGACATAT

upper sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 7
gtgagttcctttaccttctgaatttgaacttttgaagatattttgattgtatgctcctgggtttatgatcttattgcattttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT
||| || | |  |  |       ||| | ||  | || |  ||||  |      |||||  ||| |   |  |    |    |||||    || || |||||||||||||| || || || || |||||  | ||||| |||||||||||||| |||||||| |||||||| || || || || |
gtgggtgcttacaaataggatccttggaattcagcagctgatttgcgt-----ttcctgcttttcttggcaaaacaaa----cagGTGAAAGGAGAGCCCAACATATCGTATATCTGTTCCCGTTATTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCT

upper sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 7
gtgagttcctttaccttctgaatttgaacttttgaagatattttgattgtatgctcctgggtttatgatcttattgcattttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT
||| || | |  |  |       ||| | ||  | || |  ||||       | | |  | |||    || |     |    |||||    || || |||||||||||||| || || || || || ||  | ||||| |||||||||||||| |||||||| |||||||| || || || || |
gtgggtgcttacaaataggatccttggaattcagcagctgatttg------cgtttcctgcttt----tcctggcaaaacaacagGTGAAGGGAGAGCCCAACATATCGTATATCTGTTCCCGTTACTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaagatattttgattgtatgctcctgggtttatgatcttattgcattttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT
          ttttgat  putative branch site (score: 4)
                                              cattttc  putative PPT
       atattttgattgtat  TA-rich tract