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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcatactgctttatcttccatattaaagcacactacccatgtcagtggaatcttttatagatatattgattactgaaaatttaatgtgcagGCTCTGGCTGCAGCTTCAAAATCTGTTGGCTCTCTTAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGGGATTTAAACA

Basic information

species Glycine max
transcript GLYMA03G01210.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01210.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 7
----gtatgatcatactgctttatcttccatattaaagcacactacccatgtcagtggaatcttttatagatatattgattactgaaaatttaatgtgcagGCTCTGGCTGCAGCTTCAAAATCTGTTGGCTCTCTTAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGGGATTTAAACA
    | |      || ||    |       ||||| |||  |  |   || ||||| | || || |  | |||  ||  ||   | |   |  || ||||||||||||||||||| || ||| ||||||  | |||||||||||| ||||||||||| || |||||  ||||||  |||||||| ||||
aattggagttctttaatgtggaacaaatgttattatagcctagaatttatatcagttgcatgttcttaacatac-ttatttttaggatgctccatatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714420|gb|BW659104.1|BW659104
EST:     CAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAG                         GCTCTGGCTGCAGCTTCAAAATCTGTTGGCTCTCTTAAGGTTGTTCATAGT
genomic: CAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGgtatgatcat ... taatgtgcagGCTCTGGCTGCAGCTTCAAAATCTGTTGGCTCTCTTAAGGTTGTTCATAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgtcagtggaatcttttatagatatattgattactgaaaatttaatgtgcagGCTCTGGCTGCAGCTTCAAAATCTGTTGGCTCTCTTAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGGGATTTAAACA
            aatcttttatagatat  TA-rich tract