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gtatattttttttcttttaatctagcccatgcaattatttttgcatttgtcatgtgtcttatgcagttattcattcttgtcattatctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATATACTCTCCGTTTATGAGACAGAGACCTTTTCTCTCGTTGACAAGAAATCT
species | Glycine max |
transcript | GLYMA03G00470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGTTTCATGGCCTGTTTTCAA ATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATATEST: gi|254329399|gb|GR838952.1|GR838952
genomic: GAGTTTCATGGCCTGTTTTCAAgtatattttt ... atctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
EST: GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAA ATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATATEST: gi|13240090|gb|BG359399.1|BG359399
genomic: GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAgtatattttt ... atctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
EST: GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAA ATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATATEST: gi|207807815|gb|GD778500.1|GD778500
genomic: GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAgtatattttt ... atctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
EST: GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAA ATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
genomic: GCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAgtatattttt ... atctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATAT
tttgcatttgtcatgtgtcttatgcagttattcattcttgtcattatctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATATACTCTCCGTTTATGAGACAGAGACCTTTTCTCTCGTTGACAAGAAATCT
ttatcttt CT-rich tract
ttattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattttttttcttttaatctagcccatgcaattatttttgcatttgtcatgtgtcttatgcagttattcattcttgtcattatctttgcagATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATATACTCTCCGTTTATGAGACAGAGACCTTTTCTCTCGTTGACAAGAAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA