Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaatcttgatttggtgcagtcatctaggaggaaatatttatgctgttgctaatgatggtgaaataaattcagGATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGG

Basic information

species Glycine max
transcript GLYMA02G46440.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46440.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv19s0090g01220.t01 (Vitis vinifera), 3'ss of exon 6
gtaacaatcttgatttggtgcagtcatctag---gaggaaatat--ttatgctgttgctaatgatggt---------gaaataaattcagGATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGG
||||   | ||||   |||  | |||||  |   || |||||||   | | || || | ||  ||| |         |||||  || ||||||||| |||||||||||||||  ||||| ||||||||| |||||||||||||  ||  ||| || | || || | || | || |||
gtaattcttttgacagggtaaattcatcatgtttgaagaaatatgcctgtactatttcaaacaatgctcttatggtggaaatggatgcagGATTTATCAACTGGTTGGCTTCGATGTGATCCTGACCCACTTTTTAAGCCAGAGCATTATCCTTTACTAGAATGGGTTCCACAATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19937460|gb|BQ081298.1|BQ081298
EST:     TTTGCAAACTTCTTAGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAG                         GATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCA
genomic: TTTGCAAACTTCTTAGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAGgtaacaatct ... ataaattcagGATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcatctaggaggaaatatttatgctgttgctaatgatggtgaaataaattcagGATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGG
                             tgctaat  putative branch site (score: 2)
              aaatatttat  TA-rich tract