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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaattgcttgtgttgttttgtatttgttacttaaggaatttatacactagtcaatgacatgcatcattggaatgtttcagCCACCTTGGGACTTAAATGTTGAGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAG

Basic information

species Glycine max
transcript GLYMA02G44810.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44810.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 5
-------------------gtttgaattgcttgtgttgttttgtatttgttacttaaggaatttatacactagtcaatgacatgcatcattggaatgtttcagCCACCTTGGGACTTAAATGTTGAGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAG
                     |  |  ||| | |     ||| |  ||  |  |||  |||| |  |||    ||| | ||||||||| ||| ||  |||||||| || ||||| ||  | |||| ||| |||||||| ||||| |||||||||||||||||||| ||| |||||
gtttgcatgtgtcctgatgactcaatctgcatatcaccatttcttcttaatgtttatagaatat-cacatggatcactaacatgcatc-ttgtaagttttcagCCTCCATGGGATTTGGAAGTTGGGAAGAAGTTTATTATCCATTATACATATGGATGTGACTACAATTTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710619|gb|BW676545.1|BW676545
EST:     CTGCATTGCATGGTGTAAAGCATAATCTTCGCAAAGACTTTATGCTTCAG                         CCACCTTGGGACTTAAATGTTGAGAATAAGTTTATCATCCACTATACATAT
genomic: CTGCATTGCATGGTGTAAAGCATAATCTTCGCAAAGACTTTATGCTTCAGgtttgaattg ... aatgtttcagCCACCTTGGGACTTAAATGTTGAGAATAAGTTTATCATCCACTATACATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacttaaggaatttatacactagtcaatgacatgcatcattggaatgtttcagCCACCTTGGGACTTAAATGTTGAGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAG
     ttaaggaatttata  TA-rich tract