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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgtattgaaaagattatgttcttacatcataatgttaaatctatttttcatatttgatgtattttgttctgttgcagGCTCAAATCTTCTTATAGACAATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACAAATCG

Basic information

species Glycine max
transcript GLYMA02G44400.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44400.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0009g01800.t01 (Vitis vinifera), 3'ss of exon 7
-gtctgtgtattgaaaagattatgttcttacatcataatgttaaatctatttttcatatttgatgtattttgttctgttgcagGCTCAAATCTTCTTATAGACAATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACAAATCG
  | |   ||    ||   || |||| ||  ||  |  | ||  ||  ||    |  |  | |  | || | |  |  | ||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||| || || || |||||||| ||||| || ||||  ||||||||||||||
gttataactaagacaagttttttgttatttgattttc-ttttttattaatgaggctaagctaagctgttctatatttgtacagGCTCTAATCTTCTAATAGACAATGAGGGAAATTTGAAGCTTGCAGATTTTGGCCTTGCCCGGTCATTTTCAAATGATCACAATGGGAATCTTACAAATCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatcataatgttaaatctatttttcatatttgatgtattttgttctgttgcagGCTCAAATCTTCTTATAGACAATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACAAATCG
                                       ttttgttct  CT-rich tract
      ataatgttaaatctat  TA-rich tract