1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttctgctaatcaattctatttacaacacaagccatcttactgaatcaattgaaccaaattatgatgaatgatacactaaataatggacactgtttctcagGTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAG
species | Glycine max |
transcript | GLYMA02G44000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACATTAATTATGGTGCTGCAGTAAGTGAG GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTEST: gi|6724807|gb|AW309206.1|AW309206
genomic: ACATTAATTATGGTGCTGCAGTAAGTGAGgtaagtttgt ... tgtttctcagGTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATT
EST: CCGGTAACAATTCCATTAGGTACATTAATTATGGTGCTGCAGTAAGTGAG GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTNTGCAGACAGATATTEST: gi|10232634|gb|BE801522.1|BE801522
genomic: CCGGTAACAATTCCATTAGGTACATTAATTATGGTGCTGCAGTAAGTGAGgtaagtttgt ... tgtttctcagGTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATT
EST: CCGGTAACAATTCCATTAGGTACATTAATTATGGTGCTGCAGTAAGTGAG GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTEST: gi|105632325|gb|DW246413.1|DW246413
genomic: CCGGTAACAATTCCATTAGGTACATTAATTATGGTGCTGCAGTAAGTGAGgtaagtttgt ... tgtttctcagGTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATT
EST: ACATTAATTATGGTGCTGCAGTAAGTGAG GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATT
genomic: ACATTAATTATGGTGCTGCAGTAAGTGAGgtaagtttgt ... tgtttctcagGTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATT
caattgaaccaaattatgatgaatgatacactaaataatggacactgtttctcagGTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAG
cactaaa putative branch site (score: 2)
ctgtttctc putative PPT
aaattatgatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgctaatcaattctatttacaacacaagccatcttactgaatcaattgaaccaaattatgatgaatgatacactaaataatggacactgtttctcagGTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
ttctgct
- - - - - - - - - - - caacaca
- - - - - - - - - - - - - - - - - -cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - -aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatga