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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attaaaattagtgtaagggttcaccctttaaatgttgcttaaactaatagtaataggttatgaatacaaagtaaccattccctatgttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA

Basic information

species Glycine max
transcript GLYMA02G43540.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 7
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 7
attaaaattagtgtaagggttcaccctttaaatgtt--gcttaaactaatagtaataggttatgaat-acaaagtaaccattccctat--gttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA
      |  | | |||       |   | |||| ||  | || || |    ||  ||    ||| |  ||   | |   |||   |||  | |  |||||| |||||||| ||||||||  |||||   || |||||  ||||||||||||| || || || ||||||||||||||||||||||||||   ||  || ||||| |
-----gaagaatataaatcaaagctaatcaaatttttggttttaattttctgttttatccaatggaccacgctgaactgattgattatcggctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA

upper sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 7
-attaaaattagt-gtaagggttcaccctttaaatgttgcttaaactaatagtaataggttatgaatacaaagtaaccattccctatgttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA
   | |  || ||  || ||   ||     | | | ||     ||  |||| |  |   |   |         | |   || ||| |  |   |||||||||||||||||||||| | ||||    || |||||||||||||||||||| || || || ||||||||||||||||||||||| || | | |||||||||| |
tgcttagcttggtcatatggtcacaataactgattattatagtaa--aataattttgtctaccgctggtttgttgattgttgccttttctctcactttccagGTTGTGAATGAACGTGCAGAAATGCACTGTCCTGTTGTGGAGATGTCCACTCGATCCAAACTTAGTTGCTTGAGTTGGAACAAGTGTACTAAGAATCATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagtaataggttatgaatacaaagtaaccattccctatgttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA
                                             tactttcc  CT-rich tract
                                     tatgttaatacttt  TA-rich tract