Sequence
atgc intronic sequence ATGC exonic sequence...attaaaattagtgtaagggttcaccctttaaatgttgcttaaactaatagtaataggttatgaatacaaagtaaccattccctatgttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA
Basic information
species | Glycine max |
transcript | GLYMA02G43540.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 7
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 7
attaaaattagtgtaagggttcaccctttaaatgtt--gcttaaactaatagtaataggttatgaat-acaaagtaaccattccctat--gttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA
| | | ||| | | |||| || | || || | || || ||| | || | | ||| ||| | | |||||| |||||||| |||||||| ||||| || ||||| ||||||||||||| || || || |||||||||||||||||||||||||| || || ||||| |
-----gaagaatataaatcaaagctaatcaaatttttggttttaattttctgttttatccaatggaccacgctgaactgattgattatcggctgctacttttcagGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTCGGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACA
upper sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 7
-attaaaattagt-gtaagggttcaccctttaaatgttgcttaaactaatagtaataggttatgaatacaaagtaaccattccctatgttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA
| | || || || || || | | | || || |||| | | | | | | || ||| | | |||||||||||||||||||||| | |||| || |||||||||||||||||||| || || || ||||||||||||||||||||||| || | | |||||||||| |
tgcttagcttggtcatatggtcacaataactgattattatagtaa--aataattttgtctaccgctggtttgttgattgttgccttttctctcactttccagGTTGTGAATGAACGTGCAGAAATGCACTGTCCTGTTGTGGAGATGTCCACTCGATCCAAACTTAGTTGCTTGAGTTGGAACAAGTGTACTAAGAATCATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatagtaataggttatgaatacaaagtaaccattccctatgttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA
tactttcc CT-rich tract
tatgttaatacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attaaaattagtgtaagggttcaccctttaaatgttgcttaaactaatagtaataggttatgaatacaaagtaaccattccctatgttaatactttccagGTTGTGAATGAACCTACAGATGCTCATTGTCCTGTTGTGGAGATGTCTACACGTTCAAAACTTAGTTGCTTGAGTTGGAATAAATTTGCTAAGAATCAAA
- - - - - - - - - -ttcaccc
- - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttatg