1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacttattacagtcaactaacagtaacactatttttttttgtcttattaacagttcaattcaagccattttttaacattttatttgtgttatgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTATTTGGTGAATGCATTTGTGGTGGTGTGGGTTCTAGTGGTTGGATTTGGAT
species | Glycine max |
transcript | GLYMA02G42290.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAG AATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTATEST: gi|22540443|gb|BU090286.1|BU090286
genomic: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtc ... atgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
EST: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAG AATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTATEST: gi|151394389|gb|EV264260.1|EV264260
genomic: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtc ... atgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
EST: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAG AATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTATEST: gi|6666557|gb|AW278016.1|AW278016
genomic: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtc ... atgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
EST: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAG AATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
genomic: TCCCTGCTTCTGCTCATATGCTCACTTACAAATCTGCTTCTGCCCGACAGgtaaatagtc ... atgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTAT
attaacagttcaattcaagccattttttaacattttatttgtgttatgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTATTTGGTGAATGCATTTGTGGTGGTGTGGGTTCTAGTGGTTGGATTTGGAT
tgttttc CT-rich tract
attttttaacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttattacagtcaactaacagtaacactatttttttttgtcttattaacagttcaattcaagccattttttaacattttatttgtgttatgttttcagAATGCTGTTGAGAAATTACCCTTCTTCATCCCAAATTGGACAACAATGTATTTGGTGAATGCATTTGTGGTGGTGTGGGTTCTAGTGGTTGGATTTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -actaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgt