1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gagcaagtttctcaagttttctattaaatccaaagaaaaggcagtaggtttttgtattttcattgaactttttcatgtcatattttaatttacaatttagGTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTTGCTGAACCAATTCAGACT
species | Glycine max |
transcript | GLYMA02G42130.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTTEST: gi|58016014|gb|CX702756.1|CX702756
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtaatcagtg ... tacaatttagGTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTTEST: gi|254328980|gb|GR833352.1|GR833352
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtaatcagtg ... tacaatttagGTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTTEST: gi|57574911|gb|CX547886.1|CX547886
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtaatcagtg ... tacaatttagGTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTT
EST: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAG GTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTT
genomic: ATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGgtaatcagtg ... tacaatttagGTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTT
aggtttttgtattttcattgaactttttcatgtcatattttaatttacaatttagGTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTTGCTGAACCAATTCAGACT
ttttaat putative branch site (score: 3)
aactttttcatgtcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcaagtttctcaagttttctattaaatccaaagaaaaggcagtaggtttttgtattttcattgaactttttcatgtcatattttaatttacaatttagGTTAATGAAGCTTGCTTGAGTGAAGACTTGAACCACTGCTGGGAGGTGCTTGCTGAACCAATTCAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - aagaaaa