Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatattaaaattggttactttttgtttgattagaatgtggtaatgaaattaccactgtttcagataaattcactactttatgatttatatgttgattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTCACAGCAATTCTTGTTC

Basic information

species Glycine max
transcript GLYMA02G41920.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41920.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G151934_T02 (Zea mays), 3'ss of exon 9
----------------gtatgatattaaaattgg---ttactttttgtttgattagaatgtggtaatgaaattaccactgtttcagataaattc-actacttt-atgatttatatgttgattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTCACAGCAATTCTTGTTC
                 |||||  | ||||   |   ||| |||     || |   | ||   ||     |   |   ||     || | ||||  |   ||| |   || || | ||  |  |||||| ||| || || || ||||| ||  | ||  || | |  ||||||||||| || |||||||||||||| | ||||||||| || ||||| |||||  
gtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcat-tatttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCT

upper sequence: GLYMA02G41920.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0019g02430.t01 (Vitis vinifera), 3'ss of exon 9
gtatgatattaaaat--tggttactttttgtttgatta-----------------------gaatgtggtaatgaaa--ttaccactgtttcagataaattcactactttatg-atttatatgtt-------------gattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTCACAGCAATTCTTGTTC
||||||||||  |||  |    | ||||  |||| |||                       || | | ||| | ||   |||   ||  |||   |   ||   |   ||||   |||||   ||             ||| ||  ||| |||||| || ||| ||| ||| || |||||| |||| |||||| | ||||||||||| |||||| ||||||||||||| ||||| ||||      
gtatgatatttgaatactacacaattttcctttgcttatactgaattctaaaatgtcttatgactatagtactaaatgtttattgcttgttcgtgtttgtttgtttgattatctgtttatgcatttctttttttaacagATCCAAGTACTTAGAAGGCCCAGACTTGCAGGACAGCGACTAGTAGGAATGAGATCACAACCTCAAAAGCTGACTCGAAAATGTGAAGTTACAGCTATTC------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattaccactgtttcagataaattcactactttatgatttatatgttgattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTCACAGCAATTCTTGTTC
                                            tgttgat  putative branch site (score: 4)
                  ataaattcactacttt  TA-rich tract