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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctatttttagccatgtaaaaacattttttttttgttagaagtcttctgtctctaatataatattcatcttctttgttatcacagGAGATTGCACCGCAGTATTCTGGTGTTTTACATG

Basic information

species Glycine max
transcript GLYMA02G38930.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38930.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g06040.t01 (Vitis vinifera), 3'ss of exon 6
------gtttctatttttagccatgtaaaaacattttttttttgttagaagtcttctgtctctaatataatattcatcttctttgttatcacagGAGATTGCACCGCAGTATTCTGGTGTTTTACATG
       |  | |       |   || ||| ||     |  | |  |    ||   |   ||||| ||  |  | || |  |||||  |  |||||||||||||| ||||||||||||||| ||||||
gttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttcactttcttctaacatttttcttat-tcttttgtgtttccagGAGATTGCACCACAGTATTCTGGTGTTCTACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207777002|gb|GD747845.1|GD747845
EST:     CTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAG                         GAGATTGCACCGCAGTATTCTGGTGTTTTACATG
genomic: CTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgtttctattt ... gttatcacagGAGATTGCACCGCAGTATTCTGGTGTTTTACATG
EST: gi|15814220|gb|BI786495.1|BI786495
EST:     CTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAG                         GAGATTGCACCGCAGTATTCTGG
genomic: CTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgtttctattt ... gttatcacagGAGATTGCACCGCAGTATTCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttagaagtcttctgtctctaatataatattcatcttctttgttatcacagGAGATTGCACCGCAGTATTCTGGTGTTTTACATG
                    ctctaat  putative branch site (score: 3)
                                 ttcatcttctttgtt  putative PPT
                       taatataatattcatc  TA-rich tract