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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttctctttgaaaaaaatgtgatatttttttcccttaattattttgattcctctgaagtggatttgggaagtcagcttatgtatatttgatgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTC

Basic information

species Glycine max
transcript GLYMA02G36960.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295491|gb|FG987105.1|FG987105
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         ---TAGCA-GAGAATCAAGTGGTTTTTCTTGGATCAATAATTCCTGATGCT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGA-TCAAGTGGTTTT-CTTGGATCAATAATTCCTGATGCT
EST: gi|58021429|gb|CX708170.1|CX708170
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCC-A-                         -AGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
EST: gi|207833730|gb|GD807171.1|GD807171
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         CAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
EST: gi|57575838|gb|CX548809.1|CX548809
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         ---TAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCTTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
EST: gi|58025341|gb|CX712082.1|CX712082
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCC-A-                         -AGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
EST: gi|51338422|gb|CO982288.1|CO982288
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         CAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... atgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcctctgaagtggatttgggaagtcagcttatgtatatttgatgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTC
                                ttatgtatatttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttctctttgaaaaaaatgtgatatttttttcccttaattattttgattcctctgaagtggatttgggaagtcagcttatgtatatttgatgacttcagCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - -aaaaaaa
- - - - - - - - - - - - - - - - cccttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg