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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatgttatttcctcttctaattgagggttatttccactctcaatttaaggcatttctgcttctcctaacttgccctttctataatgtagctgtcgtatgaatcattatcaaaatgtacttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG

Basic information

species Glycine max
transcript GLYMA02G35500.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35500.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os07g47580.1 (Oryza sativa), 3'ss of exon 7
gtatttatgttatttcctcttctaattgagggttatttccactctcaatttaaggcatttctgcttctcctaacttgccctttctataatgtagctgtcgtatgaatcattatcaaaatgtacttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG
                              |   ||| |      || |||||  ||||  ||  |       |||| | | |  ||    |||   || |        ||| |     || ||||     ||      |    ||||||||||| || |||||||||||||| || || || ||||| |||||||| ||||
-----------------------------agcagattgctggaaccactttaa--cattgttggat------gcttgtcatgttcatt---tagacatcctgc----ttttacctgttggtgcttacagactt------tatcttttcagGTGAACGTTAGTGAACTTGGTCTGGTAACCCCTGCTGGAAAAGTTGTTTGGG

upper sequence: GLYMA02G35500.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G174204_T01 (Zea mays), 3'ss of exon 7
---------gtatttatgttatttcctcttctaattgagggttatttccactctcaatttaaggcatt---tctgcttctcctaacttgccctttctataatgtagctgtcgtatgaatcattatcaaaatgtacttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG
         | |||| |   | ||    || || |  |   || | |  | |  |  | | |||   |     || ||| |  |  || ||  || ||||      |   |       ||  |||| ||||     |  | ||    ||| |    |||||||| ||||||||||| |||||||| || || || ||||| |||||||| ||||
gtactccaagcatttttaccagtta---ttgtagtcaatacttttgtgtagtgactgtattaggtgctagccatggttcactgagattacctctt-tatatcaccccctcccctcccctc--tatcgaaat-----tgctgctcacaatagtattctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGG

upper sequence: GLYMA02G35500.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G009876_T01 (Zea mays), 3'ss of exon 7
gtatttatgttatttcctcttctaattgagggttatttccactctcaatttaaggcatttctgcttctcctaacttgccctttctataatgtagctgtcgtatgaatcattatcaaaatgtacttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG
     ||||  |     | || ||        ||  |      | |  | ||    | |  |   | |  ||  ||  | |    ||  | ||   |   |||   |   || |       | ||  | |||   ||  |    |||||||| ||||||||||| |||||||| || || || ||||| |||||||| ||||
----gtatgccaagcatttttttacc----attttatgtagtaccctgtgtagctgactagtaactatattagtttttcgtc---atggtttactgggattatctctttgtacccctcgaaaattgctgcttacaatggtcttctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192313831|gb|FK007647.1|FK007647
EST:     GCCCTATGTACACCTCTCTTGGTATCATTACCAAGGGAACTATAATTGAG                         -TGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
EST: gi|31310190|gb|CD395393.1|CD395393
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
EST: gi|120491259|gb|EH219426.1|EH219426
EST:     GCCCTATGTACACCTCTCGTGGTGTCATTACCAAGGGGACTATAATTGAG                         GTGAATGTCAGTGAACTTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGG
EST: gi|31312274|gb|CD397477.1|CD397477
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
EST: gi|192313774|gb|FK007646.1|FK007646
EST:     GCCCTATGTACACCTCTCTTGGTATCATTACCAAGGGA-CTATAATTGAG                         -TGAATGTCAGTGAACTTGGTCTTGTCACG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACG
EST: gi|20811431|gb|BQ295909.1|BQ295909
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
EST: gi|16348558|gb|BI974153.1|BI974153
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGgtatttatgt ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcgtatgaatcattatcaaaatgtacttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG
             attatcaaaatgtact  TA-rich tract