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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacagtttatttttggtacatatcaatcatgaatattttctaatttcttatttctaattctagcaatacctaatttcagGTATACAATGCTTCAGTTCATTTAAATTATGTTGATTGTAATAGGTGGCTGGGTGATTTTATCCTCTCAAAG

Basic information

species Glycine max
transcript GLYMA02G17110.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G17110.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G20740.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtaac--agtttatttttggtacatatcaatcatgaatattttctaatttcttat---ttctaattctagcaatac--ctaatttcagGTATACAATGCTTCAGTTCATTTAAATTATGTTGATTGTAATAGGTGGCTGGGTGATTTTATCCTCTCAAAG
|||||||      ||||   |||     || |||  |   | ||      |||  | ||    | |     || || |||  |||  |  ||||||  |  |||||  |||||  ||||||||| ||||||||  | ||| | |||||||||||||||||||||
gtaagtattttgttttagccttgtcttgtaacaacaagtgacatacaaatattggtgatggcctttgtaaataacattacttctatatgtagGTATTTACAGCTTCCATTCATACAAATTATGTAGATTGTAACCGTTGGTTTGGTGATTTTATCCTCTCAAAG

upper sequence: GLYMA02G17110.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 7
gtaagtaacagtttatttt-tggtacatatcaatcatgaatattttctaatttcttatttctaattctagcaatacctaatttcagGTATACAATGCTTCAGTTCATTTAAATTATGTTGATTGTAATAGGTGGCTGGGTGATTTTATCCTCTCAAAG
|| |||| | ||   |||| |  ||||| |||     |  | | |||  ||   || | ||| |   ||    ||    ||| ||||||| ||  || || ||||||| ||| |||||||| ||||||||||||||||||||||||||||| || |||
gtgagtagctgtcatttttattttacatgtcatgtgagtgtgtgttcctat---ttgtctctgaggttacttttatt--attgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193436983|gb|FK399910.1|FK399910
EST:     CCCACAAAATATGTCCAGTTTCCT                         GTATACAATGCTTCAGTTCATTTAAATTATGTTGACTGTAATAGGTGGCTA
genomic: CCCACAAAATATGTCCAGTTTCCTgtaagtaaca ... ctaatttcagGTATACAATGCTTCAGTTCATTTAAATTATGTTGATTGTAATAGGTGGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcatgaatattttctaatttcttatttctaattctagcaatacctaatttcagGTATACAATGCTTCAGTTCATTTAAATTATGTTGATTGTAATAGGTGGCTGGGTGATTTTATCCTCTCAAAG
       aatattttctaatttc  TA-rich tract