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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagaattatgcagtgtccggctctaatgctttcaaatggtcttctgaatattttaatgaattgtacagattaatgttttgctaacattttggtgatttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCGCTGAAAGCTACTCTCTCTGGGCTTCCAGACCGGGTTTTTATGAAATTAG

Basic information

species Glycine max
transcript GLYMA02G16010.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16010.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 3'ss of exon 7
gtgagagaattatgcagtgtccggctctaatgctttcaaatggtcttctgaatattttaatgaattgtacagattaatgttttgc---taacattttggtgatttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCGCTGAAAGCTACTCTCTCTGGGCTTCCAGACCGGGTTTTTATGAAATTAG
                              || |  ||| |  |||||||  |||||  |  |  ||   ||||| ||   ||||   ||| ||||   | ||||    ||||| ||||| |||||||||| |||||  ||| ||| ||||| || ||||| || || |||||||| ||||| || |||||||||||||| |||||| |  
-----------------------------gtgatgccaattc-tcttctg--tatttgcagcagctg---agattcatcccttgcgattaatatttgaatcatttttgtagGCTATACAAAAATATGGAGACATTGATGTCTACACAGCAAACTTCAGGCCCCTAAAGGCTACTCTTTCTGGACTCCCAGACCGGGTTTTCATGAAACTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424963|gb|CA936483.1|CA936483
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|208088305|gb|GD889473.1|GD889473
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|192311298|gb|FK003769.1|FK003769
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|10237572|gb|BE806460.1|BE806460
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATNTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|208312884|gb|GE111702.1|GE111702
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|19346748|gb|BM891628.1|BM891628
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTG
EST: gi|192314162|gb|FK011534.1|FK011534
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|37995669|gb|CF807258.1|CF807258
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|14258668|gb|BG881576.1|BG881576
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|7924612|gb|AW830638.1|AW830638
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|16997020|gb|BM086392.1|BM086392
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|6134950|gb|AW133343.1|AW133343
EST:     GGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: GGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|8283020|gb|BE020581.1|BE020581
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|208025741|gb|GD826617.1|GD826617
EST:     ACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
genomic: ACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCG
EST: gi|192318301|gb|FK005805.1|FK005805
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTT
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttaatgaattgtacagattaatgttttgctaacattttggtgatttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCGCTGAAAGCTACTCTCTCTGGGCTTCCAGACCGGGTTTTTATGAAATTAG
                             tgctaac  putative branch site (score: 1)
                   attaatgtttt  TA-rich tract