1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagaattgaaactttagtcataaatgaaatgctcataatttttatttgaacctgtgtcaaccacttcatcttttactttgtcttcagGGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAAGAAGAAAATCTTTATCAGCAAAAAGACCAAGTTCATATAGTGGCTGACA
species | Glycine max |
transcript | GLYMA02G14300.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACATGGAAAAGTGTCGGATGAATTCTTCCTTTCAACTGCAG GGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAAEST: gi|61996841|gb|DN676662.1|DN676662
genomic: AACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAGgtagaattga ... ttgtcttcagGGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAA
EST: AACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAG GGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAAEST: gi|51344946|gb|CO985679.1|CO985679
genomic: AACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAGgtagaattga ... ttgtcttcagGGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAA
EST: AACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAG GGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAAEST: gi|12689507|gb|BG155843.1|BG155843
genomic: AACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAGgtagaattga ... ttgtcttcagGGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAA
EST: AACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAG GGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAA
genomic: AACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAGgtagaattga ... ttgtcttcagGGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAA
tcataatttttatttgaacctgtgtcaaccacttcatcttttactttgtcttcagGGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAAGAAGAAAATCTTTATCAGCAAAAAGACCAAGTTCATATAGTGGCTGACA
cttcatcttttacttt CT-rich tract
atttttatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaattgaaactttagtcataaatgaaatgctcataatttttatttgaacctgtgtcaaccacttcatcttttactttgtcttcagGGAAGTTTCAAACTGAAATAGGAAAAAGTTGGGCTGCTGAGATCATTTCAAGAAGAAAATCTTTATCAGCAAAAAGACCAAGTTCATATAGTGGCTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA