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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactatcagtttaatacactccagtaaagtgctttacttctatgtttaacttgatatagtgttttgcttctatgttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATCGAGACAGGGAAAATGTCCAAATACAGTGGTGCTGAAACAACA

Basic information

species Glycine max
transcript GLYMA02G14060.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14060.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G016551_T01 (Zea mays), 3'ss of exon 1
gttactatcagtttaatacactccagtaaagtgctttacttctatgtttaacttgatat---------------agtgttttgcttctatgttca--atacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATCGAGACAGGGAAAATGTCCAAATACAGTGGTGCTGAAACAACA
||   | | | |  || |  ||     |  ||| ||  | |   | |  ||  |||||                | ||| ||| |  | ||   |  | |||| |||| ||||||||| ||||| |||||||| ||||||||||| |||||| | ||  | ||||  ||||| ||| |||| |||||| |    ||      |
gtattttttaataaaaaatcctaggacagggtgtttgccattcttttgcaaactgatactagcattatgacctaactgtattgttattgtgcctatcaaacagATTTGCTCGTGTTGGCTCTGTTGTTTTAGCCCTTCATGATGCAAGTGATATATTCCTAGAGATTGGGAAGATGGCCAAGTACAGTAGCTGCGAGTGGCTA

upper sequence: GLYMA02G14060.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G13580.2 (Arabidopsis thaliana), 3'ss of exon 3
-------------gttactatcagtttaatacactccagtaaagtgctttacttctatgt---ttaacttgatatagtgttttgcttctatgttcaatac---agGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATCGAGACAGGGAAAATGTCCAAATACAGTGGTGCTGAAACAACA
             || ||   |  ||  ||||     |  | |     || ||| | |     ||   ||||| |  |  |||  || | | || |   |   || ||    |||||||| ||||| ||| | || ||||| |||||||||||||||||| | |||   ||||||||||| ||||| ||||| ||||||| ||  
gtatgcttccatcgtcacatcctattctatactgaaaaacagaactgattccttttgtccacattgttttgatcttcttgtttctttttctctttatcgctgtagCTTCTCCCGTGTTGGTTCTGTTGTTCTGGCACTTCACGATGCTAGTGATGTGTTTCTTGAGGTTGGGAAAATGTCTAAATATAGTGGAGCTGAAAGAATC

upper sequence: GLYMA02G14060.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 3'ss of exon 3
-------gttactatca-gtttaatacactccagtaaagtg---ctttacttctatgtttaacttgatatagtgttttgctt---ctatgttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATCGAGACAGGGAAAATGTCCAAATACAGTGGTGCTGAAACAACA
        |   | |||   | ||||  ||    |  | |    ||||  |||| | ||| |  |  | |  | || |   |    | |||    | ||| || |  |||||||| ||||| ||||||||||||||||||||||||||||| ||| | |||  |||||| |||||||||||||  ||||||||||| || 
aaaatgtttggatttcatagtaaataatcttttatgcaatatttctttctttctttctttcatcttttttttttttctctctgatttctgtctcttgcagATTCGCCCGTGTTGGTTCTGTTGTTTTAGCTCTTCATGATGCTAGTGATGTCTTTCTGGAGGTAGGGAAGATGTCCAAATACAAAGGTGCTGAAACCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttacttctatgtttaacttgatatagtgttttgcttctatgttcaatacagGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATCGAGACAGGGAAAATGTCCAAATACAGTGGTGCTGAAACAACA
               tttaacttgatata  TA-rich tract