1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcacttaaggtttcaaagatttgtgtaagaataattttttctttaacgattgtttataataaacaaggtttcttatattgacattctactacttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCATTTTTCAGCTTTTCTTGCAATGGATTTGGACCGGACAATAGGGACTGTGG
species | Glycine max |
transcript | GLYMA02G12930.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG CATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCATEST: gi|207727273|gb|GD700885.1|GD700885
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCAT
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG CATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCATEST: gi|12689676|gb|BG156012.1|BG156012
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCAT
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG CATTGATGTGATTTAATAGTTAGAAATCTAAGGTACTCCCCAAGAGGGCATEST: gi|18690824|gb|BM519672.1|BM519672
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCAT
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG CATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCATEST: gi|7284525|gb|AW597114.1|AW597114
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCAT
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG CATTGATGTGATTCAGEST: gi|31468373|gb|CD410401.1|CD410401
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAG
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG CATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCATEST: gi|193448250|gb|FK415873.1|FK415873
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCAT
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCGGAGCCTGAG CATTGATGTGATTCAGTAGTCAGAAATCTAAGGTAEST: gi|7692312|gb|AW760421.1|AW760421
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTA
EST: GTGAGGACAACATAAAANCTGAAGAAGCCAAACCTTCTGAGCCTGAN CATTGATGTGATTCAGTAGTCAGAAATCTAAAGTACTCCCCAAGEST: gi|208072943|gb|GD868526.1|GD868526
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAG
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG CATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCATEST: gi|208227133|gb|GE022372.1|GE022372
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCAT
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG CATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCATEST: gi|57574121|gb|CX547096.1|CX547096
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCAT
EST: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAG CATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCAT
genomic: GTGAGGACAACATAAAAGCTGAAGAAGCCAAACCTTCTGAGCCTGAGgtgtgtgcat ... acttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCAT
acgattgtttataataaacaaggtttcttatattgacattctactacttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCATTTTTCAGCTTTTCTTGCAATGGATTTGGACCGGACAATAGGGACTGTGG
tattgac putative branch site (score: 2)
ctactttt putative PPT
tttataataaacaagg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacttaaggtttcaaagatttgtgtaagaataattttttctttaacgattgtttataataaacaaggtttcttatattgacattctactacttttgcagCATTGATGTGATTCAGTAGTCAGAAATCTAAGGTACTCCCCAAGAGGGCATTTTTCAGCTTTTCTTGCAATGGATTTGGACCGGACAATAGGGACTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - -tttgtgt
- - - - - - - - - - - - - aagaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacattc