1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttctggttgggattgcatatatgttttctgtttcttcatgtcagtccatttctatgttcttgttgctgaatcttactgactggaattgctgttggccagGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGAGCTTTTATTCTGCAAACAGCAGCTGATGCAGATATACCGAACCATAAC
species | Glycine max |
transcript | GLYMA02G11980.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAG GGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGEST: gi|57574097|gb|CX547072.1|CX547072
genomic: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAGgtattcctgc ... tgttggccagGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGG
EST: ATTGTTGCTNTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAG GGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGEST: gi|19453339|gb|BM954749.1|BM954749
genomic: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAGgtattcctgc ... tgttggccagGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGG
EST: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAG GGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGEST: gi|23725478|gb|BU760694.1|BU760694
genomic: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAGgtattcctgc ... tgttggccagGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGG
EST: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAG GGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGEST: gi|13482017|gb|BG511360.1|BG511360
genomic: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAGgtattcctgc ... tgttggccagGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGG
EST: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAG GGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGEST: gi|58018317|gb|CX705059.1|CX705059
genomic: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAGgtattcctgc ... tgttggccagGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGG
EST: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAG GGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGG
genomic: ATTGTTGCTTTGCTTCACGACAGTCTGGGAATTGCTTTGGATGATGAGAGgtattcctgc ... tgttggccagGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGG
tccatttctatgttcttgttgctgaatcttactgactggaattgctgttggccagGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGAGCTTTTATTCTGCAAACAGCAGCTGATGCAGATATACCGAACCATAAC
tactgac putative branch site (score: 1)
aatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctggttgggattgcatatatgttttctgtttcttcatgtcagtccatttctatgttcttgttgctgaatcttactgactggaattgctgttggccagGGTCAAGGTTGCTAATCAGGTGGGAAGTATTCCGCTTGATTGGGCTTTGGGAGCTTTTATTCTGCAAACAGCAGCTGATGCAGATATACCGAACCATAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - -ggttggg
- - - - - - - tgcatat
- - - - - - - - - - - - - - ctgtttc
- - - - - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgac