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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtcttcattatagttattaatatttgttttggttttgcttagtcagtgtatcattttcggaataaaaatactttatggtttctttttaggctgcaatctaaaagtttgtgatcatatctcacatttttgtgttatggtgaaacagGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTCGTTCTACAATCTGGGCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGATCACCCACTGTAC

Basic information

species Glycine max
transcript GLYMA02G11960.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11960.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0026g02470.t01 (Vitis vinifera), 3'ss of exon 9
gtcagtcttcattatagttattaatatttgttttggttttgcttagtcagtgtatcattttcggaataaaaatactttatggtttctttttaggctgcaatctaaaagtttgtgatcatatctcacatttttgtgttatggtgaaacagGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTCGTTCTACAATCTGGGCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGATCACCCACTGTAC
                                          ||||      |    |   |    | |  ||   || |  ||     | |  |   | |  ||||| |  |||  | || | |     ||||| | ||||||||||||||||||||||| | || ||||| ||||||||||| || || ||||| || || || || ||| | |||||  || | ||||||| |         |  |
-----------------------------------------tttagaagcaattaagtgcacttgttgagtatgtcttttacttga---tgatacaagagttcaaaagctaatga--agattttaa---cttgtgatttggtgaaacagGAGGCTGCAGCATTGGCTGCAACACAAGTTGCTTTTGTGCTGCAATCAGGACAACGAAGGGGTCTGCAGTTCACAGTTGCACCAGCACATGTAGTAGCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15284721|gb|BI468612.1|BI468612
EST:     ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA                         GAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTCGTTCTACAATCTGGG
genomic: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtcttc ... ggtgaaacagGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTCGTTCTACAATCTGGG
EST: gi|208254919|gb|GE056561.1|GE056561
EST:     ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA                         GAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTCGTTCTACAATCTGGG
genomic: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtcttc ... ggtgaaacagGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTCGTTCTACAATCTGGG
EST: gi|9564988|gb|BE474497.1|BE474497
EST:     ACATCATGGCTTGGGCCATCAGTATTCTGCAGCGTCGGCGACAAAGACAA                         GAGGCTGCAGCACTAGCAGCA
genomic: ACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtcttc ... ggtgaaacagGAGGCTGCAGCACTAGCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcaatctaaaagtttgtgatcatatctcacatttttgtgttatggtgaaacagGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTCGTTCTACAATCTGGGCAGCGTAGAGGTTTACAGTTTGCAATAGCACCAGGATCACCCACTGTAC
                         atctcac  putative branch site (score: 3)
        taaaagttt  TA-rich tract