1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acccgtgtcattaatgtgtgccttggagtagctgttattataatgttgcatgaatgatgtagctaacatggtcattttgttataacccctccatttgcagATCAAGCTTTCGTCTGTACAACTGGCAAAGAAGTATATGAAACGTGTTGCATCTGAACTTGATGAATTATCTGGTCCTGAAAAAGAACCAGCTAGAGAGT
species | Glycine max |
transcript | GLYMA02G11260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGATTCAGGGGTTGTAGGCAAG ATCAAGCTTTCGTCTGTACAACTGGCAAAGAAGTATATGAAACGTGTTGCA
genomic: ATGGATTCAGGGGTTGTAGGCAAGgtatgcttct ... ccatttgcagATCAAGCTTTCGTCTGTACAACTGGCAAAGAAGTATATGAAACGTGTTGCA
ttgcatgaatgatgtagctaacatggtcattttgttataacccctccatttgcagATCAAGCTTTCGTCTGTACAACTGGCAAAGAAGTATATGAAACGTGTTGCATCTGAACTTGATGAATTATCTGGTCCTGAAAAAGAACCAGCTAGAGAGT
ttataac putative branch site (score: 2)
cccctccattt CT-rich tract
tcattttgttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccgtgtcattaatgtgtgccttggagtagctgttattataatgttgcatgaatgatgtagctaacatggtcattttgttataacccctccatttgcagATCAAGCTTTCGTCTGTACAACTGGCAAAGAAGTATATGAAACGTGTTGCATCTGAACTTGATGAATTATCTGGTCCTGAAAAAGAACCAGCTAGAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-cccgtgt
- - - - - - - tgtgtgc
- - - - - - - - - - - - - -gtagctg
- - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacccct