Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatctcctttttctcctcttcgaatttaaacaaatagtgtcttgggaattatttttccaattaaattaattttcaacttacagGAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAG

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G12520.1 (Arabidopsis thaliana), 3'ss of exon 7
-------------gtaagatctcctttttctcctcttcgaatttaaacaaatagtgtcttgggaattatttttccaattaaattaattttcaacttacagGAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAG
             | |  |         | || |  |    || |     |   ||     |   || | ||| |   ||   || ||       | |||||||| || || ||||| || ||| |||| ||||||||| ||||||| ||||||||||||  ||||
tttgacttcctgagaagcagaagtggagtttcttgattagtttcagctgcagtatgcgcatgtttttgtgttttctgatatgctagttcgacttatccagGAATCTGTAGGTATTGCGAAAGCACTAGCCGCGAAAAATAGATACGAATTGGATTCAAATTCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730274|gb|BM525785.1|BM525785
EST:     CACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATACTG                         GAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTG
genomic: CACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATACTGgtaagatctc ... caacttacagGAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTG
EST: gi|254333563|gb|GR848481.1|GR848481
EST:     CACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATACTG                         GAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTG
genomic: CACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATACTGgtaagatctc ... caacttacagGAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaaatagtgtcttgggaattatttttccaattaaattaattttcaacttacagGAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAG
                                   aattaat  putative branch site (score: 3)
                                         ttttc  CT-rich tract
                  aattatttttccaatt  TA-rich tract