1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgtgcttttacttatttggctacgtaaagaggttttctactttctgtctaacccattttattttcctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTTCAGTTCAGGAAATTGGTGGTGTCAGG
species | Glycine max |
transcript | GLYMA02G07910.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATG CTAAAACTTTGCCAACCAAACCCEST: gi|151397877|gb|EV267750.1|EV267750
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCC
EST: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATG CTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTEST: gi|193420636|gb|FK390559.1|FK390559
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: CCGGACAACCGGCTCTGTTGCCATG CTAAAACTTCGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTEST: gi|193347893|gb|FK312785.1|FK312785
genomic: CCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: CCGGACAACCGGCTCTGTTGCCATG CTAAAACTTCGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTEST: gi|14011960|gb|BG726882.1|BG726882
genomic: CCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATG CTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTEST: gi|193427201|gb|FK393451.1|FK393451
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: CCGGACAACCGGCTCTGTTGCCATG CTAAAACTTCGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTEST: gi|254342218|gb|GR853355.1|GR853355
genomic: CCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
EST: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATG CTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
genomic: CAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgctt ... cctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTT
ctacgtaaagaggttttctactttctgtctaacccattttattttcctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTTCAGTTCAGGAAATTGGTGGTGTCAGG
gtctaac putative branch site (score: 2)
cccattttattttcct CT-rich tract
attttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgcttttacttatttggctacgtaaagaggttttctactttctgtctaacccattttattttcctgaaatagCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTTCAGTTCAGGAAATTGGTGGTGTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG