Sequence
atgc intronic sequence ATGC exonic sequence...ttttatctcatcaaaactgctgagctcatgcatgtaaactgtataaatcttgaatgtttgattatcttgtcactcataaaaattgtttgctaatttccagTTTCGGTAGTTTGCTGAACAAGAACACAATCCAAGAACCTACATTTGATAGGATAATTGTTGTGTACAG
Basic information
species | Glycine max |
transcript | GLYMA02G07370.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 3'ss of exon 7
-------ttttatctcatcaaaac--tgctgagctcatgcatgtaaactgtataaatcttgaatgtttgattatcttgtcactcataaaaattgt--ttgctaatttc-cagTTTCGGTAGTTTGCTGAACAAGAACACAATCCAAGAACCTACATTTGATAGGATAATTGTTGTGTACAG
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gttggtaattggttttctcaaattgattctgaactataatttttgaaagg---agattctgaac-tataattgggcctactttaagatgcattatcttttctggtgagacagCGTGAGAAATCTGATGAGCAAGATGACAATTCAAGAACCCACATTTGATAGGATGATTGTGGTGTACAG
upper sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G011136_T01 (Zea mays), 3'ss of exon 7
-------ttttatctcatcaaaactgctgagctcatgcatgtaaactgtataaatcttgaatgtttgattatcttgtcactcataaaaattgtttgctaatttccagTTTCGGTAGTTTGCTGAACAAGAACACAATCCAAGAACCTACATTTGATAGGATAATTGTTGTGTACAG
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gttgctcactgttctcagtaaaatttgttagactgccaaagtgccaaacatagatctaacatgc---agtatctttacacatgtgaaa----------------cagTTTGAAAAATCTCATGAGTAAGATGACAATTCAAGAACCTACATTCGATAGGATGATTGTGGTGTACAG
upper sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 7
--ttttatctcatcaaaactgctgagctcatgcatgtaaactgtat-aaatcttgaatgtttgattatcttgtcactcataaaaattgtttgctaatttccagTTTCGGTAGTTTGCTGAACAAGAACACAATCCAAGAACCTACATTTGATAGGATAATTGTTGTGTACAG
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tggacaaccttgcaattgtcatttgctgtaattgagtttcctgtcttaaatttcagatgtt-gatta-ctagtttatgactatttccttttgctc-ctcctagTGTTCGCAATCTGGCGGGCAAGATCACCATCCAAGAACCTACATTTGATAGGATAATTGTTGTTTACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatcttgaatgtttgattatcttgtcactcataaaaattgtttgctaatttccagTTTCGGTAGTTTGCTGAACAAGAACACAATCCAAGAACCTACATTTGATAGGATAATTGTTGTGTACAG
tgctaat putative branch site (score: 2)
tttcc CT-rich tract
ataaaaattgtttgct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttatctcatcaaaactgctgagctcatgcatgtaaactgtataaatcttgaatgtttgattatcttgtcactcataaaaattgtttgctaatttccagTTTCGGTAGTTTGCTGAACAAGAACACAATCCAAGAACCTACATTTGATAGGATAATTGTTGTGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - ctgctga
- - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc