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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattatcactctcaaaacaatgtttccctttcttagttttccaatgctctcacttcattgaggttataatatgtttttgggtttctaatagGCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTATTCCTTCTGTTAAAG

Basic information

species Glycine max
transcript GLYMA02G06790.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G66600.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaattattatcactctcaaaacaatgtttccctttcttagttttccaatgctctcacttcattgaggttat-aatatgtttttgggtttctaatagGCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTATTCCTTCTGTTAAAG
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gtaaaacctctttctttcaagaacttatctcagtttttctatacgcctacattttggtttc-------ttatcaaaatttctttgaatatattttagGCGTTTTTAGCTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccaatgctctcacttcattgaggttataatatgtttttgggtttctaatagGCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTATTCCTTCTGTTAAAG
          ctctcac  putative branch site (score: 3)
                                             tttct  putative PPT
                           ttataatatgttttt  TA-rich tract