1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acataatgtccattttaatttgacatttgtgagaaatagttatatgtatttttgtgtgtgcatacccctatatctgaacgtggtttatacgtgaaagcagGCTCGAATCAGCATCCAAAGCAATCAATCTTGTTCCAAAATCAGTTTCTGGTTGGAGGTCGCAGTAATATAATTTCAATTGAAGTTCCGGAAGGATCTGC
species | Glycine max |
transcript | GLYMA02G06350.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGACAAGTTCAAACGAGGTTATGAAGGCTATTGAAGAAATATCAAG GCTCGAATCAGCATCCAAAGCAATCAATCTTGTTCCAAAATCAGTTTCTGGEST: gi|15815578|gb|BI787853.1|BI787853
genomic: TTGGAGACAAGTTCAAACGAGGTTATGAAGGCTATTGAAGAAATATCAAGgtgttctctc ... gtgaaagcagGCTCGAATCAGCATCCAAAGCAATCAATCTTGTTCCAAAATCAGTTTCTGG
EST: TTGGAGACAAGTTCAAACGAGGTTATGAAGGCTATTGAAGAAATATCAAG GCTCGAATCAGCATCCAAAGCAATCAATCTTGTTCCAAAAATCAGTTTCTG
genomic: TTGGAGACAAGTTCAAACGAGGTTATGAAGGCTATTGAAGAAATATCAAGgtgttctctc ... gtgaaagcagGCTCGAATCAGCATCCAAAGCAATCAATCTTGTTCC-AAAATCAGTTTCTG
gtatttttgtgtgtgcatacccctatatctgaacgtggtttatacgtgaaagcagGCTCGAATCAGCATCCAAAGCAATCAATCTTGTTCCAAAATCAGTTTCTGGTTGGAGGTCGCAGTAATATAATTTCAATTGAAGTTCCGGAAGGATCTGC
tttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acataatgtccattttaatttgacatttgtgagaaatagttatatgtatttttgtgtgtgcatacccctatatctgaacgtggtttatacgtgaaagcagGCTCGAATCAGCATCCAAAGCAATCAATCTTGTTCCAAAATCAGTTTCTGGTTGGAGGTCGCAGTAATATAATTTCAATTGAAGTTCCGGAAGGATCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cataccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgaac