Sequence
atgc intronic sequence ATGC exonic sequence...ttatcttaactttaaaacctgtgatgttattatttttatgattgatggtgatgatccctgccaaaaaaatgacctttcacatggtcttgccaaaagttagGTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA
Basic information
species | Glycine max |
transcript | GLYMA02G05680.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G05680.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 3'ss of exon 7
ttatcttaactttaaaacctgtgatgttattatttttatgattgatggtgatgatccctgccaaaaaaatgacctttcacatggtcttgccaaaagttagGTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA
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--------gtattaaaa--tgaattgttcttgtgtatattttttgtgactata-----tcataaaatccatatgtttgctataataccttc-----ttagGTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAA
upper sequence: GLYMA02G05680.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G36210.2 (Arabidopsis thaliana), 3'ss of exon 6
------------------------------------------ttatcttaactttaaaacctgtgatgttattattttta-tgattgatg---gtgatgatccctgccaaaaaaatgac-----ctttcaca-tggtct---tgccaaaagtt--agGTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA
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gtatatgtcgttcgagaactttagtatcttaataaggaaataggatttaacatctggagcttctccttgcgttggctttactcattcacgtttgtactgattctcaagaagtgaactatagttgcttctataatagtctgatttcttactattccagGTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAA
upper sequence: GLYMA02G05680.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 7
ttatcttaactttaaaacctgtgatgttattatttttatgattgatggtgatgatccctgccaaaaaaatgacctttcacatggtcttgccaaaagtt-agGTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA
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aaatgaaaacttatgtgctagaggttgggcaaagcctacatataacattcaaaacatgagtatttcttatg-tatttcttatgacctgtcgaatcttttagGTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtgatgatccctgccaaaaaaatgacctttcacatggtcttgccaaaagttagGTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA
tcttgcc CT-rich tract
aaaaaaatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatcttaactttaaaacctgtgatgttattatttttatgattgatggtgatgatccctgccaaaaaaatgacctttcacatggtcttgccaaaagttagGTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA
- - - - - - - - -cctgtga
- - - - - - - - - - - - - - - - - - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtc