Sequence
atgc intronic sequence ATGC exonic sequencegtactactgagtcactcagattacagaaaaatataaaagaattactctgttacttgaacaataattggaaaccaaaatgatattttttttccgggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
Basic information
species | Glycine max |
transcript | GLYMA02G05650.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G05650.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G51150.2 (Arabidopsis thaliana), 3'ss of exon 9
----gtactactgagtcactcagattacagaaaaatataaaagaattactctgttacttgaacaataattggaaaccaaaatgatattttttttccgggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
|||| | | || || ||| | | ||||| || || |||| ||| | | | || | || ||| | ||||||||| ||||||||||||| ||||| || ||||| ||| | |||||||| || ||||||||||| ||| | || ||||| || ||||||||||| |
gtatatacttttaaatcttcca--ttatgtactatcctaaaacaa---------aacatgaaatatattcatagattaa-------ctaattatcc---tgcagAATTTCATTGATCTTGCTGGAAGTGAACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACAC
upper sequence: GLYMA02G05650.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 7
----gtactactgagtcact-cagatta------cagaaaa-atataaaagaattactctgttacttgaacaataattggaaaccaaaatgatattttttttccgggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
| | | | | | | | ||| | ||| || | | | || | | || | | || | || || | | |||| | | ||| ||||||| |||||||||||||| |||||||| ||||| || | |||||||| || ||| ||||||| |||||||||||||| || |||||| |||| |
gtatggatcattaatttattatagaccaatagttcagctaatacttgcagaaaacaaacaaataatgataggcatatagcaatcctcactcttattaaccctgcctgtatagAATTTTGTTGATCTTGCTGGAAGTGAGCGTGCATCTCAGTCATTATCAGCTGGCACAAGGCTGAAAGAAGGTTGCCACATAAACCGCAGTTTATTAACCC
upper sequence: GLYMA02G05650.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S343_28V6.1 (Physcomitrella patens), 3'ss of exon 7
-----------------------------------------gtactactgagtcactcagattacagaaaaatataaaagaattactctgttacttgaacaataattggaaacc-aaaatgatattttttttccg----ggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
| || | | || | | | || | | || |||| | || | | | || || | | | ||||||||||||| ||||| ||||| |||||| | ||||| ||||||||| | | ||| | ||| |||| || || ||||| || || || ||||||||
gtaactgtcgggttcatcacatctatctaaacactatgttcggtttagtatgagaccagcgtcatgggaataggccttccgcctctgttgacgtacattcaatggtcattaatctagagcactaattcctcttcatttcattacagAATTTCGTCGATCTGGCTGGAAGTGAGAGAGCATCACAAACTAATGCCGATGGAGCCAGGCTGAAGGAAGGAGCTCACATTAACCGCAGCTTACTAACCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgttacttgaacaataattggaaaccaaaatgatattttttttccgggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
tattttttttcc CT-rich tract
aaaccaaaatgatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactactgagtcactcagattacagaaaaatataaaagaattactctgttacttgaacaataattggaaaccaaaatgatattttttttccgggtacagAATTTCGTTGATCTTGCTGGGAGTGAGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG