1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgttctggttatgaagtccattggcatcttatagaatatatgggaaagctttagtagttgcctggattttcattaaatcttgtcttttctcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGACGTGAGTAAACTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGC
species | Glycine max |
transcript | GLYMA02G05250.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAG CTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGEST: gi|193333244|gb|FK298778.1|FK298778
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGgtgagtattt ... tcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAG CTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGEST: gi|12772393|gb|BG237320.1|BG237320
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGgtgagtattt ... tcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAG CTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGEST: gi|254335038|gb|GR844823.1|GR844823
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGgtgagtattt ... tcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAG CTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGEST: gi|213602974|gb|DB974139.1|DB974139
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGgtgagtattt ... tcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
EST: GAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAG CTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGEST: gi|254335039|gb|GR844824.1|GR844824
genomic: GAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGgtgagtattt ... tcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAG CTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGEST: gi|308099085|gb|HO760926.1|HO760926
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGgtgagtattt ... tcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAG CTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGEST: gi|31470062|gb|CD412090.1|CD412090
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGgtgagtattt ... tcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
EST: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAG CTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
genomic: AGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGgtgagtattt ... tcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTG
aaagctttagtagttgcctggattttcattaaatcttgtcttttctcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGACGTGAGTAAACTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGC
tcttgtcttttctcgc CT-rich tract
attttcattaaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttctggttatgaagtccattggcatcttatagaatatatgggaaagctttagtagttgcctggattttcattaaatcttgtcttttctcgcttgaagCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGACGTGAGTAAACTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - tctggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgcct