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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacatgctcctttttgtgatctattaggctaaattgtacttaaagcattttctaatatataagatggtttctttacagAGCTGTTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAG

Basic information

species Glycine max
transcript GLYMA02G04920.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341548|gb|GR852685.1|GR852685
EST:     GGCTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGA                         AGCTGTTCTCAACTTATTCTCCAAAAATATGAGTACTGCAGTAGAGAATTT
genomic: GGTTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGAgtaaaacatg ... ttctttacagAGCTGTTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTT
EST: gi|208211795|gb|GE010420.1|GE010420
EST:     TGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGA                         AGCTGTTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTT
genomic: TGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGAgtaaaacatg ... ttctttacagAGCTGTTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTT
EST: gi|151410266|gb|EV280081.1|EV280081
EST:     GGTTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGA                         AGCTGTTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTT
genomic: GGTTGGGTTGGACTGGATTTTCGAGGCTTGCTCCCATCACTTTTTGAAGAgtaaaacatg ... ttctttacagAGCTGTTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggctaaattgtacttaaagcattttctaatatataagatggtttctttacagAGCTGTTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAG
                          ttctaat  putative branch site (score: 2)
                                            tttctttac  putative PPT
                ttaaagcattttctaa  TA-rich tract