1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgggttttttccctctagtaaatgccaagtgttattttcaaggatagaatattatctttctatttcattatgtaaaactggtggatattttgcggttaatatttaacatgtggttgaatttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG
species | Glycine max |
transcript | GLYMA02G04120.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAA ATGGGGAGACATTGAATTTCCACTGCCATTTGGAAGGGTTATGAGTGCCACEST: gi|57575455|gb|CX548430.1|CX548430
genomic: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAgtgggttttt ... tttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCAC
EST: TGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAA GTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCACEST: gi|6134722|gb|AW133115.1|AW133115
genomic: TGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAgtgggttttt ... tttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCAC
EST: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAA GTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCACEST: gi|192306307|gb|FG995101.1|FG995101
genomic: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAgtgggttttt ... tttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCAC
EST: GATATGAGAG-CGAGCTAGATGACACTGCTGCTTTCAAGA-CTTCAAGAA GTGGGGAGACATTEST: gi|151410816|gb|EV280631.1|EV280631
genomic: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAgtgggttttt ... tttgttgtagGTGGGGAGACATT
EST: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAA GTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCACEST: gi|58016426|gb|CX703168.1|CX703168
genomic: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAgtgggttttt ... tttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCAC
EST: ATATGAGAGGCGAGCTAGATGACACTGCTGC-TTC-AG-ACTTTC-AGAA GTGGGGAGACA-TGAATTTCCGCTGCCATTT-GAAGGGTTATGAGTGCCAEST: gi|16346050|gb|BI971645.1|BI971645
genomic: ATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAAC-TTCAAGAAgtgggttttt ... tttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCA
EST: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAA GTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCACEST: gi|193592646|gb|FK547040.1|FK547040
genomic: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAgtgggttttt ... tttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCAC
EST: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAA GTGGGGAGACATTEST: gi|19453151|gb|BM954561.1|BM954561
genomic: GATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAgtgggttttt ... tttgttgtagGTGGGGAGACATT
EST: CAAGAACTTCAAGAA GTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCAC
genomic: CAAGAACTTCAAGAAgtgggttttt ... tttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCAC
aaaactggtggatattttgcggttaatatttaacatgtggttgaatttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG
atttaac putative branch site (score: 3)
ttaatatttaacatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttttttccctctagtaaatgccaagtgttattttcaaggatagaatattatctttctatttcattatgtaaaactggtggatattttgcggttaatatttaacatgtggttgaatttgttgtagGTGGGGAGACATTGAATTTCCGCTGCCATTTGGAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA