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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttggggtcattcttgtctgattgccacttctggtaagcttctctgactgatatgtcattatctgtctgtgtttatttcagCCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACTCATGGACTTCATTCGGAATCAGTACAGAGACAGGGGCTATCAAGAG

Basic information

species Glycine max
transcript GLYMA02G03750.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193350154|gb|FK317816.1|FK317816
EST:     ACAGGATTTTGGGTGTGAAAACAGGAGCTTATTCTTCATCATGAATGGAG                         CCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACT
genomic: ACAGGATTTTGGGTGTGAAA-CAGGAGCTTATTCTTCATCATGAATGGAGgtatgttggg ... tttatttcagCCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACT
EST: gi|193421117|gb|FK389122.1|FK389122
EST:     CACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAG                         CCCGGGAANCTGGTTTTT-CT-CCGCAAGGCACTCGGATCTACAACAAACT
genomic: CACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAGgtatgttggg ... tttatttcagCCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACT
EST: gi|254320235|gb|GR829423.1|GR829423
EST:     CACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAG                         CCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACT
genomic: CACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAGgtatgttggg ... tttatttcagCCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACT
EST: gi|14258843|gb|BG881751.1|BG881751
EST:     CACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAG                         CCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACT
genomic: CACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAGgtatgttggg ... tttatttcagCCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctggtaagcttctctgactgatatgtcattatctgtctgtgtttatttcagCCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACTCATGGACTTCATTCGGAATCAGTACAGAGACAGGGGCTATCAAGAG
                   gactgat  putative branch site (score: 3)
                                             tttatttc  putative PPT
                                           tgtttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttggggtcattcttgtctgattgccacttctggtaagcttctctgactgatatgtcattatctgtctgtgtttatttcagCCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACTCATGGACTTCATTCGGAATCAGTACAGAGACAGGGGCTATCAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA