Sequence
atgc intronic sequence ATGC exonic sequence...tcaatatattttaatctattaaaatgtgttgcttgatttcctattcttgttaattgaacttgattttttttttaaaataaaaataaaaatgtattttcagGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTAC
Basic information
species | Glycine max |
transcript | GLYMA02G01990.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G01990.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G02800.1 (Arabidopsis thaliana), 3'ss of exon 7
tcaatatattttaatctattaaaatgtg--ttgcttgatttcctattcttg--ttaattgaacttgattttttttttaaaataaaaataaaaatgtat-tttcagGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTAC
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-----attttgtattttgctaaagcatgaattaattaatatcccaatataaaatggaaagagtagtatttgcttaattaattgattcatgtgatatatgcttcagGTGGATTATCTACTTGGAGGCAACCCGTTGAAGATGTCATACATGGTTGGTTATGGTCTGAAATATCCACGTCGGATTCACCACCGTGGCTCATCTCTCC
upper sequence: GLYMA02G01990.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 7
-------------------------------------tcaatatattttaa---tctattaaaatgtgttgct-tgatttcctattcttg--ttaattgaacttg-attttttttttaaaataaaaataaaaatgt-attttcagGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTAC
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gtatatcacatcaacaacatgtcccacagaactgaagtgatcacatgtcacacccctctcacacagtcgcactgtacttccccataactgattccattaaatttacattccccctttctaatttctcttaatgtgggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCAAGGTACCCACAAAGGATACACCACAGGGGCTCATCACTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19345934|gb|BM890814.1|BM890814EST: GCGGAATCACCGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAG GTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGNTGGG
genomic: GCGGAATCACCGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGgttcgagaaa ... gtattttcagGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGG-TGGG
EST:
gi|8827967|gb|BE211697.1|BE211697EST: GCGGAATCACCGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAG GTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGG
genomic: GCGGAATCACCGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGgttcgagaaa ... gtattttcagGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgttaattgaacttgattttttttttaaaataaaaataaaaatgtattttcagGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTAC
tattttc CT-rich tract
ttgattttttttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaatatattttaatctattaaaatgtgttgcttgatttcctattcttgttaattgaacttgattttttttttaaaataaaaataaaaatgtattttcagGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTAC
- - - - - - - - - - - - - tgttgct
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