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gtatgtttattctcaacctggcatttttattatctgtttttaactttctatctgaattctgatgtgttaccatgaataaattttgcacttatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCT
species | Glycine max |
transcript | GLYMA02G01220.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCAEST: gi|15286220|gb|BI470111.1|BI470111
genomic: CTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCAEST: gi|298195934|gb|HO044325.1|HO044325
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCAEST: gi|207706316|gb|GD686934.1|GD686934
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCAEST: gi|207846087|gb|GD820304.1|GD820304
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTAEST: gi|207807268|gb|GD779339.1|GD779339
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTA
EST: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCAEST: gi|12773476|gb|BG238403.1|BG238403
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG GGCAAAGGCGAACCAAACATATCTTATATCTGTTCTEST: gi|37994511|gb|CF806247.1|CF806247
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCT
EST: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTG GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCAEST: gi|27425418|gb|CA936938.1|CA936938
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: GTGACTTTGGGAGTGCAAAAGTCTTG GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCAEST: gi|4396096|gb|AI495093.1|AI495093
genomic: GTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
EST: CTCACACTCACCAGCTAAAGATNTGTGACTTTTGGAGTGCANAAGTCTTG GTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
genomic: CTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGgtatgtttat ... tatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCA
tttctatctgaattctgatgtgttaccatgaataaattttgcacttatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCT
ttctgat putative branch site (score: 3)
cttattt putative PPT
atgaataaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttattctcaacctggcatttttattatctgtttttaactttctatctgaattctgatgtgttaccatgaataaattttgcacttatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT