Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagagagaacaaagaattaaactgtcacatcttcaaatttctgagaagtaaattctgttgatatctcaaggaacaagtaatttttatttactctgatagGGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGA

Basic information

species Glycine max
transcript GLYMA02G01060.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01060.3 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 3'ss of exon 5
-----ctagagagaacaaagaattaaactgtcaca-tcttcaaatttctgagaagtaaattctgttgatatctcaaggaacaagtaatttttatttactctgatagGGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGA
       |         |  | ||   | ||||   |  ||   ||  | |  |   |  |  ||| |  | |||     ||  |     |||  |  | ||  |||| ||||| ||||||||||| |||||||||||| |||| || || |||||  | || || |||||||||||  | || || || || || ||||| ||||
tgtttgcatcattcttcattatttctgcagtcatggttatctttttgttcaatatctatcttagtttagttttcacttttcagatg----ttacct--tttggcagGGCAGAAGATGGAGTGATGGTCTTCACCAAGCAATTGAAGCTAAAGAAGGTGTACCTATACAAAATGAAACAATTACCCTTGCGTCAATAAGTTATCAGA

upper sequence: GLYMA02G01060.3 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 7
------ctagagagaacaaagaattaaactgtcacatcttcaaatttctgagaagtaaattctgttgatatctcaaggaacaagtaatttttatttactctgatagGGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGA
       |  |         ||| |  |||||   ||  |    ||  ||| |    |||  | |    |      | || ||       || |||| | |||||||| ||  | ||||| ||||| |||||||| || ||||| ||||| ||||||||||| ||||||||||||||||| ||||| || || |||||||| ||||
atattgttgtattctttggggaaat--actgttctattct----ttggtgaaacaccaatgatataaggagggttggtaataatcctagcttgtttattttgatagGGAAGGCGATGGAGCGATGGACTTCACCAGGCGGTTGAAGCAAAAGAAGGGTTGCCCATTCAAAATGAAACTGTGACGCTAGCCTCAATCAGTTATCAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278936|gb|BI943171.1|BI943171
EST:     GTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAG                         GGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGG
genomic: GTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAGgtatttagag ... actctgatagGGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtaaattctgttgatatctcaaggaacaagtaatttttatttactctgatagGGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGA
           tgttgat  putative branch site (score: 4)
                                    tttttatttactct  putative PPT
                           aacaagtaatttttat  TA-rich tract