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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggggaaattcctggtaattgacataggtgcttttctttcttgtaattatttgatttttcttacatgcttctggttcctcagGCCTGCAAAATTGTTGAGGGACAACGATATACAAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCTCGTGATCGAG

Basic information

species Glycine max
transcript GLYMA02G00510.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 7
--------------------gtaggggaaattcctggtaattgacataggtgcttttctttcttgt--aattatttgatttttcttacatgcttctggttcctcagGCCTGCAAAATTGTTGAGGGACAACGATATACAAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCTCGTGATCGAG
                    ||     |  |   | |    | |  || ||    |||   ||||   ||  |  | ||  || | | ||  ||||       |||||||| || ||||||||||| ||  |||||||||| ||||||||||| ||||| |||||  |  | || || |||||||| |  || ||| | || |  |
gttggtattaatctcatcaagtcacaaatttcattagctggtcaattatgtaacattcaaccttggtaaaagacatcatcattttgagatatttcttac----cagGCCTGTAAGATTGTTGAGGGTCAGAGATATACAAAGAGGTTGAATGAAAAGCAGATCACATCATTACTCAAGGTTACTTGCCGTAGGCCTAGAGAACAGG

upper sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G43810.1 (Arabidopsis thaliana), 3'ss of exon 7
gtagg--ggaaattcctggta-attgacataggtgcttttctttcttgtaattatttgatttttcttacatgcttctggttcctcagGCCTGCAAAATTGTTGAGGGACAACGATATACAAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCTCGTGATCGAG
|||    | ||| | |||||   ||    |     |||  | ||   |   ||   |  |||  || |     ||     |    |||| ||||||||||| ||||||||||| || || |||||||||||||||||||| || ||||||||| |||||||||| || ||||| ||  | ||  |||
gtaaaccgtaaactgctggtttgtttgtttcaagacttcacatttcagctcttggctattttcgctgattcaatttccaatgt--agGCATGCAAAATTGTCGAGGGACAACGGTACACGAAAAGGTTGAATGAGAAGCAGATTACTGCTCTCTTGAAAGTTACATGCCAAAGGCCGAGGGACAGAG

upper sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 7
----------gtaggggaaa---------ttcctggtaattgacataggtgcttttctttcttgtaattatttgatttttcttacatgcttctggttcctcagGCCTGCAAAATTGTTGAGGGACAACGATATACAAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCTCGTGATCGAG
           |||  || |         ||| |  | |||||  | | | |   |  |   ||||||| |    |     |||||||||| |||||   ||||||||||||||||| ||||| || || ||||| |||||||||||||||| |||||| ||||||||  | |||||||| || ||||||||  | ||||  |
gtacagagtgttagctgataatttttcttttcttactgattgatttggttacaggttctctctgtaattctcatctggaatttacatgcttgtggtttgccagGCCTGCAAAATTGTAGAGGGGCAGCGGTATACCAAAAGGTTGAATGAGAGGCAAATTACTGCTCTATTAAAAGTTACATGCCAAAGACCCAGGGATCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcttttctttcttgtaattatttgatttttcttacatgcttctggttcctcagGCCTGCAAAATTGTTGAGGGACAACGATATACAAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCTCGTGATCGAG
                              ttcttac  putative branch site (score: 2)
                                               ttcctc  putative PPT
     tttctttcttgtaatt  TA-rich tract