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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgatcgagtggagtgtgaatttgtttgtttccgattaatattaacatatatcctcaactcaaatatatgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACCGCGCATGCTTG

Basic information

species Glycine max
transcript GLYMA01G45070.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G45070.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 7
---------------gtatgtgatcgagtggagtgtgaat-ttgtttgtttccgattaatattaacatatatcctcaactcaaatatatgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACCGCGCATGCTTG
                |   |  |    ||   | |         ||   |   |||||| |   |   | |  | |  |  | |    |  | |||||||||| ||  | |||||||||||||| ||| |||||||||| ||||||||||| ||||| | |||  | |||||||| ||||||||  | ||  | ||
gtaatggatatttcttttcatctttacatgatatcttgtcaccagtttccttaaattaatttcctccattgttgttattttgattggtggtgtacagTGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAATGGTGATGAGTTTTTGTGCCGGTGTTGGGGCTTCTACTACACACACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203170|gb|BI425938.1|BI425938
EST:     ACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGGACCTCTGTG                         TGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAA
genomic: ACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGGACCTCTGTGgtatgtgatc ... atgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAA
EST: gi|208249654|gb|GE048637.1|GE048637
EST:     ACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGGACCTCTGTG                         TGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGA
genomic: ACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGGACCTCTGTGgtatgtgatc ... atgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgtttccgattaatattaacatatatcctcaactcaaatatatgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACCGCGCATGCTTG
                 tattaac  putative branch site (score: 1)
            attaatattaacatat  TA-rich tract