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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgctaattgctctctgaatgtcactcttccttgcataataaatgtggatagacttcttctaacaagttgatacacttttctttggctctattttgtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTTATTAGG

Basic information

species Glycine max
transcript GLYMA01G43700.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193697178|gb|FK634862.1|FK634862
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|58020530|gb|CX707272.1|CX707272
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|33387576|gb|CA850783.1|CA850783
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|11690203|gb|BF597941.1|BF597941
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|58020723|gb|CX707465.1|CX707465
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|193414772|gb|FK379732.1|FK379732
EST:     TCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: TCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|213596031|gb|DB981571.1|DB981571
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|31307302|gb|CD392505.1|CD392505
EST:     CAACCTCTTCTAGTGATGGGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|193340529|gb|FK307506.1|FK307506
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGG
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGG
EST: gi|19052831|gb|BM731498.1|BM731498
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|193605186|gb|FK559930.1|FK559930
EST:     TTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: TTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|208234629|gb|GE031460.1|GE031460
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGAT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGAT
EST: gi|31475365|gb|CD417393.1|CD417393
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|208261455|gb|GE059110.1|GE059110
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGGATAATTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGG-ATAATTTT
EST: gi|10255716|gb|BE823531.1|BE823531
EST:     CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAG                         ATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CAACCTCTTCTAGTGATGTGGCCTCCCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
EST: gi|58020917|gb|CX707659.1|CX707659
EST:     CCATTAGTTTTGTCTACAATTCAAG                         ATTTGAATTGTAGGTATTAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT
genomic: CCATTAGTTTTGTTTACAATTCAAGgtactgctaa ... gtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacttcttctaacaagttgatacacttttctttggctctattttgtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTTATTAGG
                          ttttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactgctaattgctctctgaatgtcactcttccttgcataataaatgtggatagacttcttctaacaagttgatacacttttctttggctctattttgtgcctcaagATTTGAATTGTAGGTAATAAGAATAGAAGTGGCCAGCTGGGGATAATTTTTATTAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG