1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcctaaaacgtagaacatcttgaaccgagtcattttcatttgtatttagctattatgcagtgcatgtataattaattctcctgactattcatgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAA
species | Glycine max |
transcript | GLYMA01G43540.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG AAAATTCCACTTGTGATGGCTGGCCGTAGACCAGGTGATGCTGAAATTGTTEST: gi|163918103|gb|EH039061.1|EH039061
genomic: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGgtaatagaat ... atgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTT
EST: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG AAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTEST: gi|22933171|gb|BU550310.1|BU550310
genomic: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGgtaatagaat ... atgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTT
EST: GAACATCAGTTNNNGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG AAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTEST: gi|9898582|gb|BE607550.1|BE607550
genomic: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGgtaatagaat ... atgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTT
EST: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG AAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTEST: gi|57574123|gb|CX547098.1|CX547098
genomic: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGgtaatagaat ... atgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTT
EST: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG AAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTEST: gi|209720496|gb|BW674679.1|BW674679
genomic: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGgtaatagaat ... atgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTT
EST: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG AAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTEST: gi|57574248|gb|CX547223.1|CX547223
genomic: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGgtaatagaat ... atgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTT
EST: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAG AAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTT
genomic: GAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGgtaatagaat ... atgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTT
ttagctattatgcagtgcatgtataattaattctcctgactattcatgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAA
tcctgac putative branch site (score: 2)
atgtataattaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctaaaacgtagaacatcttgaaccgagtcattttcatttgtatttagctattatgcagtgcatgtataattaattctcctgactattcatgtgttcagAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - cttgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgta